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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.008G116800.1 | ||||||||
Common Name | B456_008G116800, LOC105762429 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | ERF | ||||||||
Protein Properties | Length: 294aa MW: 32512.7 Da PI: 9.4311 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.8 | 3.6e-20 | 34 | 84 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ++ GVr+++ +grWvAeI+d s +r r +lg+++t+eeAa+a+++a+++l+ge Gorai.008G116800.1 34 RFVGVRQRP-SGRWVAEIKDSS---QRVRLWLGTYDTPEEAARAYDEAARALRGE 84 589******.7*********43...36**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 3.6E-15 | 34 | 84 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.25E-31 | 34 | 91 | No hit | No description |
SMART | SM00380 | 7.9E-37 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-28 | 34 | 92 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.534 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.62E-20 | 35 | 91 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.9E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MAGPESTTKT TTVITNTNNT TTTMAQPLTK PTRRFVGVRQ RPSGRWVAEI KDSSQRVRLW 60 LGTYDTPEEA ARAYDEAARA LRGENARTNF ASVNNSSTQP VISGCNGRQN GLSAFSSLKA 120 KLSKNLQSIM ARNGENKSTK SRVSDHFTFA SIFHFRNNQY HNNQDQNIHK VVQPSIVVPR 180 IGNEPPPPPP PQPRLSWDSS SVSDCSNEWI GFRQHGLDSD GSDIGEVSFR DHHGFSDEMM 240 GWVDSPDHHH NTISSRLISG DYDDDNHGSR SKRFKVSSSV VVPPTFSGSS YHN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616081 | 0.0 | JX616081.1 Gossypium hirsutum clone NBRI_GE60472 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012435689.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor 11-like | ||||
TrEMBL | A0A0D2T4H2 | 0.0 | A0A0D2T4H2_G | ||||
STRING | POPTR_0014s07280.1 | 1e-108 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM18292 | 8 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-17 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.008G116800.1 |
Entrez Gene | 105762429 |
Publications ? help Back to Top | |||
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